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Marine0311 I talked with the guy who runs the WSP, and he said that as long as you explain in your app what your plans are in a clear manner, they will consider you. Whether that be the Bachelor or Masters program. They will, however, consider you an "unusual candidate" since you already have your degree. I think it's definitely something you ought to check out next year. They've expanded the program beyond just Yale. The plan is to open up a "branch", if you will, at UMich and Harvard next year, which will greatly expand the number of veterans who can attend.
I will say that it can be a bit intimidating going from the military to whatever-college to Yale (even if it is for just two weeks), but I think you'll find that you adjust after a little while. I think everyone has the proper academic chops for it, they just need to be pushed a little bit.